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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-04-24 18:43:52 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-04-24 18:46:28 +0200 |
| commit | b2955e224ece2cc24582bb1f87f4ac6b27aa0025 (patch) | |
| tree | 1fc123be2157e0d3babed3af0a77ca4596c8e073 /gnu | |
| parent | c136240efc7753124f8f9e99025bd69f6c4ceaf3 (diff) | |
gnu: python-pysam: Fix tests, again.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nosetests
explicitly with a single process.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 027d0eaf1b..3eabcf8412 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1460,9 +1460,12 @@ multiple sequence alignments.") (setenv "HOME" "/tmp") (and (zero? (system* "make" "-C" "pysam_data")) (zero? (system* "make" "-C" "cbcf_data")) + ;; Running nosetests without explicitly asking for a + ;; single process leads to a crash. Running with multiple + ;; processes fails because the tests are not designed to + ;; run in parallel. (zero? (system* "nosetests" "-v" - "--processes" - (number->string (parallel-job-count))))))))))) + "--processes" "1"))))))))) (propagated-inputs `(("htslib" ,htslib))) ; Included from installed header files. (inputs |