diff options
| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-12-18 12:07:56 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-12-21 17:22:16 +0100 |
| commit | bf7764b74f6052bbb977b869efdcfbb8b6e9e588 (patch) | |
| tree | 4c7ba9022948389ba7ecec49118b9180155e4f69 /gnu/packages/bioinformatics.scm | |
| parent | 78addcb0ebce8a387be6ec43192cce7490cba794 (diff) | |
gnu: Add GenomeInfoDb.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cbc83dd391..f4679cf9d4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3245,6 +3245,33 @@ naming and share the same rich and consistent \"Vector API\" as much as possible.") (license license:artistic2.0))) +(define-public r-genomeinfodb + (package + (name "r-genomeinfodb") + (version "1.6.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "GenomeInfoDb" version)) + (sha256 + (base32 + "1j2n1v1mrw1fxn7cyffz112pm76wd6gy9q9qwlsfv3brbsqbvdbf")))) + (properties + `((upstream-name . "GenomeInfoDb") + (r-repository . bioconductor))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-iranges" ,r-iranges) + ("r-s4vectors" ,r-s4vectors))) + (home-page "http://bioconductor.org/packages/GenomeInfoDb") + (synopsis "Utilities for manipulating chromosome identifiers") + (description + "This package contains data and functions that define and allow +translation between different chromosome sequence naming conventions (e.g., +\"chr1\" versus \"1\"), including a function that attempts to place sequence +names in their natural, rather than lexicographic, order.") + (license license:artistic2.0))) + (define-public r-qtl (package (name "r-qtl") |