diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-29 22:41:58 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-30 08:55:46 +0100 |
| commit | a6e1eb1a96799212815eda7b0408d778b7000022 (patch) | |
| tree | 07b5be5a43cc77d5e9efd6dee54e1f538060bcf6 | |
| parent | 98a2af31a8066eff780a71a6366749cad5d3d580 (diff) | |
gnu: Add r-roar.
* gnu/packages/bioconductor.scm (r-roar): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b0c1fb08bf..d87d9135ff 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3914,3 +3914,32 @@ normalization. YARN leverages many Bioconductor tools and statistical techniques to account for the large heterogeneity and sparsity found in very large RNA-seq experiments.") (license license:artistic2.0))) + +(define-public r-roar + (package + (name "r-roar") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "roar" version)) + (sha256 + (base32 + "15650s9vs7dvmqpvrs4xwn6j4kh14yqsx4daqyhhxxr68kn8mklw")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://github.com/vodkatad/roar/") + (synopsis "Identify differential APA usage from RNA-seq alignments") + (description + "This package provides tools for identifying preferential usage of APA +sites, comparing two biological conditions, starting from known alternative +sites and alignments obtained from standard RNA-seq experiments.") + (license license:gpl3))) |