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| author | Ben Woodcroft <donttrustben@gmail.com> | 2015-07-21 16:37:23 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-07-21 16:39:38 +0200 |
| commit | 8dc797fa28d237f30979166bf924c7919d12f88d (patch) | |
| tree | 420493e99e94a201beab5b14bc3fcdaf0828efb0 | |
| parent | 5ff0edaee6942a21d20624aade41a228932fb372 (diff) | |
gnu: Add aragorn.
* gnu/packages/bioinformatics.scm (aragorn): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 78cd3ce321..b38b9c8bb5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -54,6 +54,54 @@ #:use-module (gnu packages xml) #:use-module (gnu packages zip)) +(define-public aragorn + (package + (name "aragorn") + (version "1.2.36") + (source (origin + (method url-fetch) + (uri (string-append + "http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn" + version ".tgz")) + (sha256 + (base32 + "1dg7jlz1qpqy88igjxd6ncs11ccsirb36qv1z01a0np4i4jh61mb")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; there are no tests + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda _ + (zero? (system* "gcc" + "-O3" + "-ffast-math" + "-finline-functions" + "-o" + "aragorn" + (string-append "aragorn" ,version ".c"))))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (man (string-append out "/share/man/man1"))) + (mkdir-p bin) + (copy-file "aragorn" + (string-append bin "/aragorn")) + (mkdir-p man) + (copy-file "aragorn.1" + (string-append man "/aragorn.1"))) + #t))))) + (home-page "http://mbio-serv2.mbioekol.lu.se/ARAGORN") + (synopsis "Detect tRNA, mtRNA and tmRNA genes in nucleotide sequences") + (description + "Aragorn identifies transfer RNA, mitochondrial RNA and +transfer-messenger RNA from nucleotide sequences, based on homology to known +tRNA consensus sequences and RNA structure. It also outputs the secondary +structure of the predicted RNA.") + (license license:gpl2))) + (define-public bamtools (package (name "bamtools") |