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authorEli Zaretskii <eliz@gnu.org>2001-11-06 18:59:06 +0000
committerEli Zaretskii <eliz@gnu.org>2001-11-06 18:59:06 +0000
commit136211a997eb94f7dc6f97219052317116e114da (patch)
tree014fd8ffa0fa5c5d81869ec26426fb262471ee23 /lisp/calc/calc-stat.el
parent0ffbbdeb4464b5b0d63e83fe3f8e91674248d84d (diff)
Initial import of Calc 2.02f.
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+;; Calculator for GNU Emacs, part II [calc-stat.el]
+;; Copyright (C) 1990, 1991, 1992, 1993 Free Software Foundation, Inc.
+;; Written by Dave Gillespie, daveg@synaptics.com.
+
+;; This file is part of GNU Emacs.
+
+;; GNU Emacs is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY. No author or distributor
+;; accepts responsibility to anyone for the consequences of using it
+;; or for whether it serves any particular purpose or works at all,
+;; unless he says so in writing. Refer to the GNU Emacs General Public
+;; License for full details.
+
+;; Everyone is granted permission to copy, modify and redistribute
+;; GNU Emacs, but only under the conditions described in the
+;; GNU Emacs General Public License. A copy of this license is
+;; supposed to have been given to you along with GNU Emacs so you
+;; can know your rights and responsibilities. It should be in a
+;; file named COPYING. Among other things, the copyright notice
+;; and this notice must be preserved on all copies.
+
+
+
+;; This file is autoloaded from calc-ext.el.
+(require 'calc-ext)
+
+(require 'calc-macs)
+
+(defun calc-Need-calc-stat () nil)
+
+
+;;; Statistical operations on vectors.
+
+(defun calc-vector-count (arg)
+ (interactive "P")
+ (calc-slow-wrapper
+ (calc-vector-op "coun" 'calcFunc-vcount arg))
+)
+
+(defun calc-vector-sum (arg)
+ (interactive "P")
+ (calc-slow-wrapper
+ (if (calc-is-hyperbolic)
+ (calc-vector-op "vprd" 'calcFunc-vprod arg)
+ (calc-vector-op "vsum" 'calcFunc-vsum arg)))
+)
+
+(defun calc-vector-product (arg)
+ (interactive "P")
+ (calc-hyperbolic-func)
+ (calc-vector-sum arg)
+)
+
+(defun calc-vector-max (arg)
+ (interactive "P")
+ (calc-slow-wrapper
+ (if (calc-is-inverse)
+ (calc-vector-op "vmin" 'calcFunc-vmin arg)
+ (calc-vector-op "vmax" 'calcFunc-vmax arg)))
+)
+
+(defun calc-vector-min (arg)
+ (interactive "P")
+ (calc-invert-func)
+ (calc-vector-max arg)
+)
+
+(defun calc-vector-mean (arg)
+ (interactive "P")
+ (calc-slow-wrapper
+ (if (calc-is-hyperbolic)
+ (if (calc-is-inverse)
+ (calc-vector-op "harm" 'calcFunc-vhmean arg)
+ (calc-vector-op "medn" 'calcFunc-vmedian arg))
+ (if (calc-is-inverse)
+ (calc-vector-op "meae" 'calcFunc-vmeane arg)
+ (calc-vector-op "mean" 'calcFunc-vmean arg))))
+)
+
+(defun calc-vector-mean-error (arg)
+ (interactive "P")
+ (calc-invert-func)
+ (calc-vector-mean arg)
+)
+
+(defun calc-vector-median (arg)
+ (interactive "P")
+ (calc-hyperbolic-func)
+ (calc-vector-mean arg)
+)
+
+(defun calc-vector-harmonic-mean (arg)
+ (interactive "P")
+ (calc-invert-func)
+ (calc-hyperbolic-func)
+ (calc-vector-mean arg)
+)
+
+(defun calc-vector-geometric-mean (arg)
+ (interactive "P")
+ (calc-slow-wrapper
+ (if (calc-is-hyperbolic)
+ (calc-binary-op "geom" 'calcFunc-agmean arg)
+ (calc-vector-op "geom" 'calcFunc-vgmean arg)))
+)
+
+(defun calc-vector-sdev (arg)
+ (interactive "P")
+ (calc-slow-wrapper
+ (if (calc-is-hyperbolic)
+ (if (calc-is-inverse)
+ (calc-vector-op "pvar" 'calcFunc-vpvar arg)
+ (calc-vector-op "var" 'calcFunc-vvar arg))
+ (if (calc-is-inverse)
+ (calc-vector-op "psdv" 'calcFunc-vpsdev arg)
+ (calc-vector-op "sdev" 'calcFunc-vsdev arg))))
+)
+
+(defun calc-vector-pop-sdev (arg)
+ (interactive "P")
+ (calc-invert-func)
+ (calc-vector-sdev arg)
+)
+
+(defun calc-vector-variance (arg)
+ (interactive "P")
+ (calc-hyperbolic-func)
+ (calc-vector-sdev arg)
+)
+
+(defun calc-vector-pop-variance (arg)
+ (interactive "P")
+ (calc-invert-func)
+ (calc-hyperbolic-func)
+ (calc-vector-sdev arg)
+)
+
+(defun calc-vector-covariance (arg)
+ (interactive "P")
+ (calc-slow-wrapper
+ (let ((n (if (eq arg 1) 1 2)))
+ (if (calc-is-hyperbolic)
+ (calc-enter-result n "corr" (cons 'calcFunc-vcorr
+ (calc-top-list-n n)))
+ (if (calc-is-inverse)
+ (calc-enter-result n "pcov" (cons 'calcFunc-vpcov
+ (calc-top-list-n n)))
+ (calc-enter-result n "cov" (cons 'calcFunc-vcov
+ (calc-top-list-n n)))))))
+)
+
+(defun calc-vector-pop-covariance (arg)
+ (interactive "P")
+ (calc-invert-func)
+ (calc-vector-covariance arg)
+)
+
+(defun calc-vector-correlation (arg)
+ (interactive "P")
+ (calc-hyperbolic-func)
+ (calc-vector-covariance arg)
+)
+
+(defun calc-vector-op (name func arg)
+ (setq calc-aborted-prefix name
+ arg (prefix-numeric-value arg))
+ (if (< arg 0)
+ (error "Negative arguments not allowed"))
+ (calc-enter-result arg name (cons func (calc-top-list-n arg)))
+)
+
+
+
+
+;;; Useful statistical functions
+
+;;; Sum, product, etc., of one or more values or vectors.
+;;; Each argument must be either a number or a vector. Vectors
+;;; are flattened, but variables inside are assumed to represent
+;;; non-vectors.
+
+(defun calcFunc-vsum (&rest vecs)
+ (math-reduce-many-vecs 'calcFunc-add 'calcFunc-vsum vecs 0)
+)
+
+(defun calcFunc-vprod (&rest vecs)
+ (math-reduce-many-vecs 'calcFunc-mul 'calcFunc-vprod vecs 1)
+)
+
+(defun calcFunc-vmax (&rest vecs)
+ (if (eq (car-safe (car vecs)) 'sdev)
+ '(var inf var-inf)
+ (if (eq (car-safe (car vecs)) 'intv)
+ (nth 3 (math-fix-int-intv (car vecs)))
+ (math-reduce-many-vecs 'calcFunc-max 'calcFunc-vmax vecs
+ '(neg (var inf var-inf)))))
+)
+
+(defun calcFunc-vmin (&rest vecs)
+ (if (eq (car-safe (car vecs)) 'sdev)
+ '(neg (var inf var-inf))
+ (if (eq (car-safe (car vecs)) 'intv)
+ (nth 2 (math-fix-int-intv (car vecs)))
+ (math-reduce-many-vecs 'calcFunc-min 'calcFunc-vmin vecs
+ '(var inf var-inf))))
+)
+
+(defun math-reduce-many-vecs (func whole-func vecs ident)
+ (let ((const-part nil)
+ (symb-part nil)
+ val vec)
+ (let ((calc-internal-prec (+ calc-internal-prec 2)))
+ (while vecs
+ (setq val (car vecs))
+ (and (eq (car-safe val) 'var)
+ (eq (car-safe (calc-var-value (nth 2 val))) 'vec)
+ (setq val (symbol-value (nth 2 val))))
+ (cond ((Math-vectorp val)
+ (setq vec (append (and const-part (list const-part))
+ (math-flatten-vector val)))
+ (setq const-part (if vec
+ (calcFunc-reducer
+ (math-calcFunc-to-var func)
+ (cons 'vec vec))
+ ident)))
+ ((or (Math-objectp val) (math-infinitep val))
+ (setq const-part (if const-part
+ (funcall func const-part val)
+ val)))
+ (t
+ (setq symb-part (nconc symb-part (list val)))))
+ (setq vecs (cdr vecs))))
+ (if const-part
+ (progn
+ (setq const-part (math-normalize const-part))
+ (if symb-part
+ (funcall func const-part (cons whole-func symb-part))
+ const-part))
+ (if symb-part (cons whole-func symb-part) ident)))
+)
+
+
+;;; Return the number of data elements among the arguments.
+(defun calcFunc-vcount (&rest vecs)
+ (let ((count 0))
+ (while vecs
+ (setq count (if (Math-vectorp (car vecs))
+ (+ count (math-count-elements (car vecs)))
+ (if (Math-objectp (car vecs))
+ (1+ count)
+ (if (and (eq (car-safe (car vecs)) 'var)
+ (eq (car-safe (calc-var-value
+ (nth 2 (car vecs))))
+ 'vec))
+ (+ count (math-count-elements
+ (symbol-value (nth 2 (car vecs)))))
+ (math-reject-arg (car vecs) 'numvecp))))
+ vecs (cdr vecs)))
+ count)
+)
+
+(defun math-count-elements (vec)
+ (let ((count 0))
+ (while (setq vec (cdr vec))
+ (setq count (if (Math-vectorp (car vec))
+ (+ count (math-count-elements (car vec)))
+ (1+ count))))
+ count)
+)
+
+
+(defun math-flatten-many-vecs (vecs)
+ (let ((p vecs)
+ (vec (list 'vec)))
+ (while p
+ (setq vec (nconc vec
+ (if (Math-vectorp (car p))
+ (math-flatten-vector (car p))
+ (if (Math-objectp (car p))
+ (list (car p))
+ (if (and (eq (car-safe (car p)) 'var)
+ (eq (car-safe (calc-var-value
+ (nth 2 (car p)))) 'vec))
+ (math-flatten-vector (symbol-value
+ (nth 2 (car p))))
+ (math-reject-arg (car p) 'numvecp)))))
+ p (cdr p)))
+ vec)
+)
+
+(defun calcFunc-vflat (&rest vecs)
+ (math-flatten-many-vecs vecs)
+)
+
+(defun math-split-sdev-vec (vec zero-ok)
+ (let ((means (list 'vec))
+ (wts (list 'vec))
+ (exact nil)
+ (p vec))
+ (while (and (setq p (cdr p))
+ (not (and (consp (car p))
+ (eq (car (car p)) 'sdev)))))
+ (if (null p)
+ (list vec nil)
+ (while (setq vec (cdr vec))
+ (if (and (consp (setq p (car vec)))
+ (eq (car p) 'sdev))
+ (or exact
+ (setq means (cons (nth 1 p) means)
+ wts (cons (nth 2 p) wts)))
+ (if zero-ok
+ (setq means (cons (nth 1 p) means)
+ wts (cons 0 wts))
+ (or exact
+ (setq means (list 'vec)
+ wts nil
+ exact t))
+ (setq means (cons p means)))))
+ (list (nreverse means)
+ (and wts (nreverse wts)))))
+)
+
+
+;;; Return the arithmetic mean of the argument numbers or vectors.
+;;; (If numbers are error forms, computes the weighted mean.)
+(defun calcFunc-vmean (&rest vecs)
+ (let* ((split (math-split-sdev-vec (math-flatten-many-vecs vecs) nil))
+ (means (car split))
+ (wts (nth 1 split))
+ (len (1- (length means))))
+ (if (= len 0)
+ (math-reject-arg nil "*Must be at least 1 argument")
+ (if (and (= len 1) (eq (car-safe (nth 1 means)) 'intv))
+ (let ((x (math-fix-int-intv (nth 1 means))))
+ (calcFunc-vmean (nth 2 x) (nth 3 x)))
+ (math-with-extra-prec 2
+ (if (and wts (> len 1))
+ (let* ((sqrwts (calcFunc-map '(var mul var-mul) wts wts))
+ (suminvsqrwts (calcFunc-reduce
+ '(var add var-add)
+ (calcFunc-map '(var div var-div)
+ 1 sqrwts))))
+ (math-div (calcFunc-reduce '(var add var-add)
+ (calcFunc-map '(var div var-div)
+ means sqrwts))
+ suminvsqrwts))
+ (math-div (calcFunc-reduce '(var add var-add) means) len))))))
+)
+
+(defun math-fix-int-intv (x)
+ (if (math-floatp x)
+ x
+ (list 'intv 3
+ (if (memq (nth 1 x) '(2 3)) (nth 2 x) (math-add (nth 2 x) 1))
+ (if (memq (nth 1 x) '(1 3)) (nth 3 x) (math-sub (nth 3 x) 1))))
+)
+
+;;; Compute the mean with an error estimate.
+(defun calcFunc-vmeane (&rest vecs)
+ (let* ((split (math-split-sdev-vec (math-flatten-many-vecs vecs) nil))
+ (means (car split))
+ (wts (nth 1 split))
+ (len (1- (length means))))
+ (if (= len 0)
+ (math-reject-arg nil "*Must be at least 1 argument")
+ (math-with-extra-prec 2
+ (if wts
+ (let* ((sqrwts (calcFunc-map '(var mul var-mul) wts wts))
+ (suminvsqrwts (calcFunc-reduce
+ '(var add var-add)
+ (calcFunc-map '(var div var-div)
+ 1 sqrwts))))
+ (math-make-sdev
+ (math-div (calcFunc-reduce '(var add var-add)
+ (calcFunc-map '(var div var-div)
+ means sqrwts))
+ suminvsqrwts)
+ (list 'calcFunc-sqrt (math-div 1 suminvsqrwts))))
+ (let ((mean (math-div (calcFunc-reduce '(var add var-add) means)
+ len)))
+ (math-make-sdev
+ mean
+ (list 'calcFunc-sqrt
+ (math-div (calcFunc-reducer
+ '(var add var-add)
+ (calcFunc-map '(var pow var-pow)
+ (calcFunc-map '(var abs var-abs)
+ (calcFunc-map
+ '(var add var-add)
+ means
+ (math-neg mean)))
+ 2))
+ (math-mul len (1- len))))))))))
+)
+
+
+;;; Compute the median of a list of values.
+(defun calcFunc-vmedian (&rest vecs)
+ (let* ((flat (copy-sequence (cdr (math-flatten-many-vecs vecs))))
+ (p flat)
+ (len (length flat))
+ (hlen (/ len 2)))
+ (if (= len 0)
+ (math-reject-arg nil "*Must be at least 1 argument")
+ (if (and (= len 1) (memq (car-safe (car flat)) '(sdev intv)))
+ (calcFunc-vmean (car flat))
+ (while p
+ (if (eq (car-safe (car p)) 'sdev)
+ (setcar p (nth 1 (car p))))
+ (or (Math-anglep (car p))
+ (math-reject-arg (car p) 'anglep))
+ (setq p (cdr p)))
+ (setq flat (sort flat 'math-lessp))
+ (if (= (% len 2) 0)
+ (math-div (math-add (nth (1- hlen) flat) (nth hlen flat)) 2)
+ (nth hlen flat)))))
+)
+
+
+(defun calcFunc-vgmean (&rest vecs)
+ (let* ((flat (math-flatten-many-vecs vecs))
+ (len (1- (length flat))))
+ (if (= len 0)
+ (math-reject-arg nil "*Must be at least 1 argument")
+ (math-with-extra-prec 2
+ (let ((x (calcFunc-reduce '(var mul math-mul) flat)))
+ (if (= len 2)
+ (math-sqrt x)
+ (math-pow x (list 'frac 1 len)))))))
+)
+
+
+(defun calcFunc-agmean (a b)
+ (cond ((Math-equal a b) a)
+ ((math-zerop a) a)
+ ((math-zerop b) b)
+ (calc-symbolic-mode (math-inexact-result))
+ ((not (Math-realp a)) (math-reject-arg a 'realp))
+ ((not (Math-realp b)) (math-reject-arg b 'realp))
+ (t
+ (math-with-extra-prec 2
+ (setq a (math-float (math-abs a))
+ b (math-float (math-abs b)))
+ (let (mean)
+ (while (not (math-nearly-equal-float a b))
+ (setq mean (math-mul-float (math-add-float a b) '(float 5 -1))
+ b (math-sqrt-float (math-mul-float a b))
+ a mean))
+ a))))
+)
+
+
+(defun calcFunc-vhmean (&rest vecs)
+ (let* ((flat (math-flatten-many-vecs vecs))
+ (len (1- (length flat))))
+ (if (= len 0)
+ (math-reject-arg nil "*Must be at least 1 argument")
+ (math-with-extra-prec 2
+ (math-div len
+ (calcFunc-reduce '(var add math-add)
+ (calcFunc-map '(var inv var-inv) flat))))))
+)
+
+
+
+;;; Compute the sample variance or standard deviation of numbers or vectors.
+;;; (If the numbers are error forms, only the mean part of them is used.)
+(defun calcFunc-vvar (&rest vecs)
+ (if (and (= (length vecs) 1)
+ (memq (car-safe (car vecs)) '(sdev intv)))
+ (if (eq (car-safe (car vecs)) 'intv)
+ (math-intv-variance (car vecs) nil)
+ (math-sqr (nth 2 (car vecs))))
+ (math-covariance vecs nil nil 0))
+)
+
+(defun calcFunc-vsdev (&rest vecs)
+ (if (and (= (length vecs) 1)
+ (memq (car-safe (car vecs)) '(sdev intv)))
+ (if (eq (car-safe (car vecs)) 'intv)
+ (if (math-floatp (car vecs))
+ (math-div (math-sub (nth 3 (car vecs)) (nth 2 (car vecs)))
+ (math-sqrt-12))
+ (math-sqrt (calcFunc-vvar (car vecs))))
+ (nth 2 (car vecs)))
+ (math-sqrt (math-covariance vecs nil nil 0)))
+)
+
+;;; Compute the population variance or std deviation of numbers or vectors.
+(defun calcFunc-vpvar (&rest vecs)
+ (if (and (= (length vecs) 1)
+ (memq (car-safe (car vecs)) '(sdev intv)))
+ (if (eq (car-safe (car vecs)) 'intv)
+ (math-intv-variance (car vecs) t)
+ (math-sqr (nth 2 (car vecs))))
+ (math-covariance vecs nil t 0))
+)
+
+(defun calcFunc-vpsdev (&rest vecs)
+ (if (and (= (length vecs) 1)
+ (memq (car-safe (car vecs)) '(sdev intv)))
+ (if (eq (car-safe (car vecs)) 'intv)
+ (if (math-floatp (car vecs))
+ (math-div (math-sub (nth 3 (car vecs)) (nth 2 (car vecs)))
+ (math-sqrt-12))
+ (math-sqrt (calcFunc-vpvar (car vecs))))
+ (nth 2 (car vecs)))
+ (math-sqrt (math-covariance vecs nil t 0)))
+)
+
+(defun math-intv-variance (x pop)
+ (or (math-constp x) (math-reject-arg x 'constp))
+ (if (math-floatp x)
+ (math-div (math-sqr (math-sub (nth 3 x) (nth 2 x))) 12)
+ (let* ((x (math-fix-int-intv x))
+ (len (math-sub (nth 3 x) (nth 2 x)))
+ (hlen (math-quotient len 2)))
+ (math-div (if (math-evenp len)
+ (calcFunc-sum '(^ (var X var-X) 2) '(var X var-X)
+ (math-neg hlen) hlen)
+ (calcFunc-sum '(^ (- (var X var-X) (/ 1 2)) 2)
+ '(var X var-X)
+ (math-neg hlen) (math-add hlen 1)))
+ (if pop (math-add len 1) len))))
+)
+
+;;; Compute the covariance and linear correlation coefficient.
+(defun calcFunc-vcov (vec1 &optional vec2)
+ (math-covariance (list vec1) (list vec2) nil 1)
+)
+
+(defun calcFunc-vpcov (vec1 &optional vec2)
+ (math-covariance (list vec1) (list vec2) t 1)
+)
+
+(defun calcFunc-vcorr (vec1 &optional vec2)
+ (math-covariance (list vec1) (list vec2) nil 2)
+)
+
+
+(defun math-covariance (vec1 vec2 pop mode)
+ (or (car vec2) (= mode 0)
+ (progn
+ (if (and (eq (car-safe (car vec1)) 'var)
+ (eq (car-safe (calc-var-value (nth 2 (car vec1)))) 'vec))
+ (setq vec1 (symbol-value (nth 2 (car vec1))))
+ (setq vec1 (car vec1)))
+ (or (math-matrixp vec1) (math-dimension-error))
+ (or (= (length (nth 1 vec1)) 3) (math-dimension-error))
+ (setq vec2 (list (math-mat-col vec1 2))
+ vec1 (list (math-mat-col vec1 1)))))
+ (math-with-extra-prec 2
+ (let* ((split1 (math-split-sdev-vec (math-flatten-many-vecs vec1) nil))
+ (means1 (car split1))
+ (wts1 (nth 1 split1))
+ split2 means2 (wts2 nil)
+ (sqrwts nil)
+ suminvsqrwts
+ (len (1- (length means1))))
+ (if (< len (if pop 1 2))
+ (math-reject-arg nil (if pop
+ "*Must be at least 1 argument"
+ "*Must be at least 2 arguments")))
+ (if (or wts1 wts2)
+ (setq sqrwts (math-add
+ (if wts1
+ (calcFunc-map '(var mul var-mul) wts1 wts1)
+ 0)
+ (if wts2
+ (calcFunc-map '(var mul var-mul) wts2 wts2)
+ 0))
+ suminvsqrwts (calcFunc-reduce
+ '(var add var-add)
+ (calcFunc-map '(var div var-div) 1 sqrwts))))
+ (or (= mode 0)
+ (progn
+ (setq split2 (math-split-sdev-vec (math-flatten-many-vecs vec2)
+ nil)
+ means2 (car split2)
+ wts2 (nth 2 split1))
+ (or (= len (1- (length means2))) (math-dimension-error))))
+ (let* ((diff1 (calcFunc-map
+ '(var add var-add)
+ means1
+ (if sqrwts
+ (math-div (calcFunc-reduce
+ '(var add var-add)
+ (calcFunc-map '(var div var-div)
+ means1 sqrwts))
+ (math-neg suminvsqrwts))
+ (math-div (calcFunc-reducer '(var add var-add) means1)
+ (- len)))))
+ (diff2 (if (= mode 0)
+ diff1
+ (calcFunc-map
+ '(var add var-add)
+ means2
+ (if sqrwts
+ (math-div (calcFunc-reduce
+ '(var add var-add)
+ (calcFunc-map '(var div var-div)
+ means2 sqrwts))
+ (math-neg suminvsqrwts))
+ (math-div (calcFunc-reducer '(var add var-add) means2)
+ (- len))))))
+ (covar (calcFunc-map '(var mul var-mul) diff1 diff2)))
+ (if sqrwts
+ (setq covar (calcFunc-map '(var div var-div) covar sqrwts)))
+ (math-div
+ (calcFunc-reducer '(var add var-add) covar)
+ (if (= mode 2)
+ (let ((var1 (calcFunc-map '(var mul var-mul) diff1 diff1))
+ (var2 (calcFunc-map '(var mul var-mul) diff2 diff2)))
+ (if sqrwts
+ (setq var1 (calcFunc-map '(var div var-div) var1 sqrwts)
+ var2 (calcFunc-map '(var div var-div) var2 sqrwts)))
+ (math-sqrt
+ (math-mul (calcFunc-reducer '(var add var-add) var1)
+ (calcFunc-reducer '(var add var-add) var2))))
+ (if sqrwts
+ (if pop
+ suminvsqrwts
+ (math-div (math-mul suminvsqrwts (1- len)) len))
+ (if pop len (1- len))))))))
+)
+
+
+
+